species:   Artha
pid:       MI0013366
parent:    ath-MIR2936
paralog:   
locus:     4:1046804-1046983
matures:   ['CUUGAGAGAGAGAACACAGACG', 'UCUGUUUUCUCUCUUUUCAAGAA']
srr:       SRR9216053
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram 4:1046804-1046983

0 out of bounds
2 alignments
2 proper strand
2 stranded perfect matches

                    ********************                                                                                           ********************                             
CCAUUUUCGAAAGCCUUGAGAGAGAGAACACAGACGAUACCAACUUUCUUCAAUCUCGUUGCCGCAGUAUAAUUAUCUCAUUCCUCGGAUAUAUCUCUCCUUCUGCGGCGGCGACAAGAAGCUACAAGAAUAAAAAGUCUGUUUUCUCUCUUUUCAAGAAACCACUUACUUCGAAAAUGG
(((((((((((...((((((((((((((.((((((........(((.((((....((((((((((((..............((....)).............))))))))))))...))))....)))........)))))).))))))).)))))))...........)))))))))))
--------------CUUGAGAGAGAGAACACAGACG------------------------------------------------------------------------------------------------------------------------------------------------ l=22 a=0 c
-----------------------------------------------------------------------------------------------------------------------------------------UCUGUUUUCUCUCUUUUCAAGAA-------------------- l=23 a=0 c*
-------------------------------------------------------------------------------------------------------------------------------------AAAGUCUGUUUUCUCUCU----------------------------- l=18 a=1 ma
----------------------AGAGAACACAGACGAUAC-------------------------------------------------------------------------------------------------------------------------------------------- l=18 a=0 ma*

----------------------------------------------------------------------------------------------------------------------------------------GUCUGUUUUCUCUC------------------------------ l=14 a=1 
-------------------------------------------------------------------------------------------------------------------------------------AAAGUCUGUUUUCUCUCU----------------------------- l=18 a=1 (ma)

mb-01011
ax-1001001
ku-01
ss-100011101100
fn-011
